Drug Discovery – NVIDIA Technical Blog News and tutorials for developers, data scientists, and IT admins 2025-06-02T22:56:06Z http://www.open-lab.net/blog/feed/ Kyle Tretina <![CDATA[Guiding Generative Molecular Design with Experimental Feedback Using Oracles]]> http://www.open-lab.net/blog/?p=96966 2025-03-25T17:23:57Z 2025-03-19T15:00:00Z Generative chemistry with AI has the potential to revolutionize how scientists approach drug discovery and development, health, and materials science and...]]> Generative chemistry with AI has the potential to revolutionize how scientists approach drug discovery and development, health, and materials science and...An illustration of molecules.

Generative chemistry with AI has the potential to revolutionize how scientists approach drug discovery and development, health, and materials science and engineering. Instead of manually designing molecules with ��chemical intuition�� or screening millions of existing chemicals, researchers can train neural networks to propose novel molecular structures tailored to the desired properties.

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Nitzan Simchi <![CDATA[Spotlight: Drug Discovery Startup Protai Advances Complex Structure Prediction with AlphaFold, Proteomics, and NVIDIA NIM]]> http://www.open-lab.net/blog/?p=96107 2025-04-23T02:44:24Z 2025-02-19T17:30:00Z Generative AI, especially with breakthroughs like AlphaFold and RosettaFold, is transforming drug discovery and how biotech companies and research laboratories...]]> Generative AI, especially with breakthroughs like AlphaFold and RosettaFold, is transforming drug discovery and how biotech companies and research laboratories...

Generative AI, especially with breakthroughs like AlphaFold and RosettaFold, is transforming drug discovery and how biotech companies and research laboratories study protein structures, unlocking groundbreaking insights into protein interactions. Proteins are dynamic entities. It has been postulated that a protein��s native state is known by its sequence of amino acids alone��

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Kyle Tretina <![CDATA[Understanding the Language of Life��s Biomolecules Across Evolution at a New Scale with Evo 2]]> http://www.open-lab.net/blog/?p=95589 2025-04-23T02:44:28Z 2025-02-19T17:14:51Z AI has evolved from an experimental curiosity to a driving force within biological research. The convergence of deep learning algorithms, massive omics...]]> AI has evolved from an experimental curiosity to a driving force within biological research. The convergence of deep learning algorithms, massive omics...A horizontal helix.

AI has evolved from an experimental curiosity to a driving force within biological research. The convergence of deep learning algorithms, massive omics datasets, and automated laboratory workflows has allowed scientists to tackle problems once thought intractable��from rapid protein structure prediction to generative drug design, increasing the need for AI literacy among scientists.

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Michelle Horton <![CDATA[Advancing Rare Disease Detection with AI-Powered Cellular Profiling]]> http://www.open-lab.net/blog/?p=95498 2025-04-23T15:01:14Z 2025-01-29T20:45:46Z Rare diseases are difficult to diagnose due to limitations in traditional genomic sequencing. Wolfgang Pernice, assistant professor at Columbia University, is...]]> Rare diseases are difficult to diagnose due to limitations in traditional genomic sequencing. Wolfgang Pernice, assistant professor at Columbia University, is...An illustration of DNA molecule structure.

Rare diseases are difficult to diagnose due to limitations in traditional genomic sequencing. Wolfgang Pernice, assistant professor at Columbia University, is using AI-powered cellular profiling to bridge these gaps and advance personalized medicine. At NVIDIA GTC 2024, Pernice shared insights from his lab��s work with diseases like Charcot-Marie-Tooth (CMT) and mitochondrial disorders.

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Kyle Tretina <![CDATA[Evaluating GenMol as a Generalist Foundation Model for Molecular Generation]]> http://www.open-lab.net/blog/?p=94836 2025-01-23T19:54:29Z 2025-01-13T14:00:00Z Traditional computational drug discovery relies almost exclusively on highly task-specific computational models for hit identification and lead optimization....]]> Traditional computational drug discovery relies almost exclusively on highly task-specific computational models for hit identification and lead optimization....

Traditional computational drug discovery relies almost exclusively on highly task-specific computational models for hit identification and lead optimization. Adapting these specialized models to new tasks requires substantial time, computational power, and expertise��challenges that grow when researchers simultaneously work across multiple targets or properties.

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Kyle Tretina <![CDATA[Accelerate Protein Engineering with the NVIDIA BioNeMo Blueprint for Generative Protein Binder Design]]> http://www.open-lab.net/blog/?p=94851 2025-01-23T19:54:28Z 2025-01-13T14:00:00Z Designing a therapeutic protein that specifically binds its target in drug discovery is a staggering challenge. Traditional workflows are often a painstaking...]]> Designing a therapeutic protein that specifically binds its target in drug discovery is a staggering challenge. Traditional workflows are often a painstaking...

Designing a therapeutic protein that specifically binds its target in drug discovery is a staggering challenge. Traditional workflows are often a painstaking trial-and-error process��iterating through thousands of candidates, each synthesis and validation round taking months if not years. Considering the average human protein is 430 amino acids long, the number of possible designs translates to��

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Vega Shah <![CDATA[In-Silico Antibody Development with AlphaBind Using NVIDIA BioNeMo and AWS HealthOmics]]> http://www.open-lab.net/blog/?p=92757 2024-12-12T19:38:30Z 2024-12-03T18:00:00Z Antibodies have become the most prevalent class of therapeutics, primarily due to their ability to target specific antigens, enabling them to treat a wide range...]]> Antibodies have become the most prevalent class of therapeutics, primarily due to their ability to target specific antigens, enabling them to treat a wide range...Image shows a 3D molecular structure of a protein, most likely an antibody, visualized using a ribbon diagram, with the classic Y-shaped configuration characteristic of antibodies.

Antibodies have become the most prevalent class of therapeutics, primarily due to their ability to target specific antigens, enabling them to treat a wide range of diseases, from cancer to autoimmune disorders. Their specificity reduces the likelihood of off-target effects, making them safer and often more effective than small-molecule drugs for complex conditions. As a result��

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Mario Geiger <![CDATA[Accelerate Drug and Material Discovery with New Math Library NVIDIA cuEquivariance]]> http://www.open-lab.net/blog/?p=91896 2024-11-18T22:58:58Z 2024-11-18T18:30:00Z AI models for science are often trained to make predictions about the workings of nature, such as predicting the structure of a biomolecule or the properties of...]]> AI models for science are often trained to make predictions about the workings of nature, such as predicting the structure of a biomolecule or the properties of...

AI models for science are often trained to make predictions about the workings of nature, such as predicting the structure of a biomolecule or the properties of a new solid that can become the next battery material. These tasks require high precision and accuracy. What makes AI for science even more challenging is that highly accurate and precise scientific data is often scarce��

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Kyle Tretina <![CDATA[Boost Alphafold2 Protein Structure Prediction with GPU-Accelerated MMseqs2]]> http://www.open-lab.net/blog/?p=91623 2024-11-14T17:10:35Z 2024-11-13T17:00:00Z The ability to compare the sequences of multiple related proteins is a foundational task for many life science researchers. This is often done in the form of a...]]> The ability to compare the sequences of multiple related proteins is a foundational task for many life science researchers. This is often done in the form of a...A protein structure illustration.

The ability to compare the sequences of multiple related proteins is a foundational task for many life science researchers. This is often done in the form of a multiple sequence alignment (MSA), and the evolutionary information retrieved from these alignments can yield insights into protein structure, function, and evolutionary history. Now, with MMseqs2-GPU, an updated GPU-accelerated��

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Gaurav Tripathi <![CDATA[High Throughput AI-Driven Drug Discovery Pipeline]]> http://www.open-lab.net/blog/?p=90642 2024-11-14T17:10:56Z 2024-10-30T17:54:45Z The integration of AI in drug discovery is revolutionizing the way researchers approach the development of new treatments for various diseases. Traditional...]]> The integration of AI in drug discovery is revolutionizing the way researchers approach the development of new treatments for various diseases. Traditional...Workflow diagram for the Innoplexus ADMET pipeline.

The integration of AI in drug discovery is revolutionizing the way researchers approach the development of new treatments for various diseases. Traditional methods are often time-consuming and costly, with the process of bringing a new drug to market taking up to 15 years and costing between $1�C2B. By using AI and advanced computational tools, researchers can now accelerate the��

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Michelle Horton <![CDATA[Optimizing Drug Discovery with CUDA Graphs, Coroutines, and GPU Workflows]]> http://www.open-lab.net/blog/?p=90780 2024-10-31T16:21:20Z 2024-10-23T17:28:49Z Pharmaceutical research demands fast, efficient simulations to predict how molecules interact, speeding up drug discovery. Jiqun Tu, a senior developer...]]> Pharmaceutical research demands fast, efficient simulations to predict how molecules interact, speeding up drug discovery. Jiqun Tu, a senior developer...Illustration representing drug discovery.

Pharmaceutical research demands fast, efficient simulations to predict how molecules interact, speeding up drug discovery. Jiqun Tu, a senior developer technology engineer at NVIDIA, and Ellery Russell, tech lead for the Desmond engine at Schr?dinger, explore advanced GPU optimization techniques designed to accelerate molecular dynamics simulations. In this NVIDIA GTC 2024 session��

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Michelle Horton <![CDATA[AI Uses Zero-Shot Learning to Find Existing Drugs for Treating Rare Diseases]]> http://www.open-lab.net/blog/?p=89672 2024-10-17T19:07:03Z 2024-10-02T16:25:36Z A groundbreaking drug-repurposing AI model could bring new hope to doctors and patients trying to treat diseases with limited or no existing treatment options....]]> A groundbreaking drug-repurposing AI model could bring new hope to doctors and patients trying to treat diseases with limited or no existing treatment options....An illustration of proteins.

A groundbreaking drug-repurposing AI model could bring new hope to doctors and patients trying to treat diseases with limited or no existing treatment options. Called TxGNN, this zero-shot tool helps doctors find new uses for existing drugs for conditions that might otherwise go untreated. The study, recently published in Nature Medicine and led by scientists from Harvard University��

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Kristen Rumley <![CDATA[NVIDIA Launches NIM Agent Blueprints for Generative AI]]> http://www.open-lab.net/blog/?p=87899 2024-11-04T22:52:07Z 2024-08-27T13:00:00Z Now available��NIM Agent Blueprints for digital humans, multimodal PDF data extraction, and drug discovery.]]> Now available��NIM Agent Blueprints for digital humans, multimodal PDF data extraction, and drug discovery.image of a digital human, drug discover and pdf workflow

Now available��NIM Agent Blueprints for digital humans, multimodal PDF data extraction, and drug discovery.

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Tianna Nguy <![CDATA[NVIDIA GTC Training Labs On Demand Available Now]]> http://www.open-lab.net/blog/?p=82157 2024-05-07T17:47:17Z 2024-05-07T17:02:57Z Missed GTC or want to replay your favorite training labs? Find it on demand with the NVIDIA GTC Training Labs playlist.]]> Missed GTC or want to replay your favorite training labs? Find it on demand with the NVIDIA GTC Training Labs playlist.nearly 100 training labs from GTC available on demand

Missed GTC or want to replay your favorite training labs? Find it on demand with the NVIDIA GTC Training Labs playlist.

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Feiwen Zhu <![CDATA[Optimizing OpenFold Training for Drug Discovery]]> http://www.open-lab.net/blog/?p=78346 2024-03-07T19:18:52Z 2024-02-28T19:29:02Z Predicting 3D protein structures from amino acid sequences has been an important long-standing question in bioinformatics. In recent years, deep...]]> Predicting 3D protein structures from amino acid sequences has been an important long-standing question in bioinformatics. In recent years, deep...Decorative image of colorful protein structures.

Predicting 3D protein structures from amino acid sequences has been an important long-standing question in bioinformatics. In recent years, deep learning�Cbased computational methods have been emerging and have shown promising results. Among these lines of work, AlphaFold2 is the first method that has achieved results comparable to slower physics-based computational methods.

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Alan Nafiiev <![CDATA[Accelerating Drug Discovery at Receptor.AI with NVIDIA BioNeMo Cloud APIs]]> http://www.open-lab.net/blog/?p=77569 2024-05-08T17:57:29Z 2024-02-14T21:00:00Z The quest for new, effective treatments for diseases that remain stubbornly resistant to current therapies is at the heart of drug discovery. This traditionally...]]> The quest for new, effective treatments for diseases that remain stubbornly resistant to current therapies is at the heart of drug discovery. This traditionally...

The quest for new, effective treatments for diseases that remain stubbornly resistant to current therapies is at the heart of drug discovery. This traditionally long and expensive process has been radically improved by AI techniques like deep learning, empowered by the rise of accelerated computing. Receptor.AI, a London-based drug discovery company and NVIDIA Inception member��

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Abraham Stern <![CDATA[New Models MolMIM and DiffDock Power Molecule Generation and Molecular Docking in NVIDIA BioNeMo]]> http://www.open-lab.net/blog/?p=75967 2024-01-25T18:17:38Z 2024-01-08T19:00:00Z The search for viable drugs is one of the most formidable challenges at the intersection of science, technology, and medicine.  Mathematically, the odds of...]]> The search for viable drugs is one of the most formidable challenges at the intersection of science, technology, and medicine.  Mathematically, the odds of...Decorative image of molecular displays.

The search for viable drugs is one of the most formidable challenges at the intersection of science, technology, and medicine. Mathematically, the odds of randomly stumbling across a good therapeutic candidate are staggeringly small. This is owed primarily to the astronomically large number of ways that just a handful of atoms can be connected together to make what appear at first glance to be��

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Michelle Horton <![CDATA[Webinar: Accelerating Large-Scale Genomics Research]]> http://www.open-lab.net/blog/?p=75551 2024-01-11T19:49:36Z 2024-01-02T17:00:00Z Learn how the Francis Crick Institute is using NVIDIA Clara Parabricks to enable key parts of TRACERx EVO, a new program that builds on the discoveries made in...]]> Learn how the Francis Crick Institute is using NVIDIA Clara Parabricks to enable key parts of TRACERx EVO, a new program that builds on the discoveries made in...Graphic of two people in white coats standing in front of monitors and keyboards.

Learn how the Francis Crick Institute is using NVIDIA Clara Parabricks to enable key parts of TRACERx EVO, a new program that builds on the discoveries made in the world��s largest long-term lung study.

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Bruno Trentini <![CDATA[Breakthrough in Functional Annotation with HiFi-NN]]> http://www.open-lab.net/blog/?p=75395 2024-09-17T17:12:14Z 2023-12-19T19:00:00Z Enzymes are vital biological catalysts for a multitude of processes, from cellular metabolism to industrial manufacturing. The applications of artificial...]]> Enzymes are vital biological catalysts for a multitude of processes, from cellular metabolism to industrial manufacturing. The applications of artificial...A triptych of digital graphics showcasing biomolecular structures resembling biomes, DNA, cells, and data points.

Enzymes are vital biological catalysts for a multitude of processes, from cellular metabolism to industrial manufacturing. The applications of artificial intelligence for enzyme generation is an exciting field of research with direct applications in the life sciences. Advances in these scientific challenges are a critical necessity to further advance drug discovery, environmental science��

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Abhishek Verma <![CDATA[Supercharging AI Video and AI Inference Performance with NVIDIA L4 GPUs]]> http://www.open-lab.net/blog/?p=62109 2023-10-25T23:51:25Z 2023-03-21T17:00:00Z NVIDIA T4 was introduced 4 years ago as a universal GPU for use in mainstream servers. T4 GPUs achieved widespread adoption and are now the highest-volume...]]> NVIDIA T4 was introduced 4 years ago as a universal GPU for use in mainstream servers. T4 GPUs achieved widespread adoption and are now the highest-volume...Picture of L4 GPU on a black background.

NVIDIA T4 was introduced 4 years ago as a universal GPU for use in mainstream servers. T4 GPUs achieved widespread adoption and are now the highest-volume NVIDIA data center GPU. T4 GPUs were deployed into use cases for AI inference, cloud gaming, video, and visual computing. At the NVIDIA GTC 2023 keynote, NVIDIA introduced several inference platforms for AI workloads��

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Vanessa Braunstein <![CDATA[Build Generative AI Pipelines for Drug Discovery with NVIDIA BioNeMo Service]]> http://www.open-lab.net/blog/?p=61944 2023-06-09T22:35:27Z 2023-03-21T15:50:00Z Creating new drug candidates is a heroic endeavor, often taking over 10 years to bring a drug to market. New supercomputing-scale large language models (LLMs)...]]> Creating new drug candidates is a heroic endeavor, often taking over 10 years to bring a drug to market. New supercomputing-scale large language models (LLMs)...

Creating new drug candidates is a heroic endeavor, often taking over 10 years to bring a drug to market. New supercomputing-scale large language models (LLMs) that understand biology and chemistry text are helping scientists understand proteins, small molecules, DNA, and biomedical text. These state-of-the-art AI models help generate de novo proteins and molecules and predict the 3D��

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Vanessa Braunstein <![CDATA[Predict Protein Structures and Properties with Biomolecular Large Language Models]]> http://www.open-lab.net/blog/?p=58461 2023-06-12T08:22:17Z 2022-12-08T23:29:40Z The NVIDIA BioNeMo service is now available for early access. At GTC Fall 2022, NVIDIA unveiled BioNeMo, a domain-specific framework and service for training...]]> The NVIDIA BioNeMo service is now available for early access. At GTC Fall 2022, NVIDIA unveiled BioNeMo, a domain-specific framework and service for training...Biomolecular structure

The NVIDIA BioNeMo service is now available for early access. At GTC Fall 2022, NVIDIA unveiled BioNeMo, a domain-specific framework and service for training and serving biomolecular large language models (LLMs) for chemistry and biology at supercomputing scale across billions of parameters. The BioNeMo service is domain-optimized for chemical, proteomic, and genomic applications��

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Michelle Horton <![CDATA[Upcoming Event: Healthcare & Life Sciences Developer Summit November 10, 2022]]> http://www.open-lab.net/blog/?p=56367 2023-06-12T08:42:36Z 2022-10-24T16:00:00Z A virtual event designed for healthcare developers and startups, this summit on November 10, 2022 offers a full day of technical talks to reach developers and...]]> A virtual event designed for healthcare developers and startups, this summit on November 10, 2022 offers a full day of technical talks to reach developers and...

A virtual event designed for healthcare developers and startups, this summit on November 10, 2022 offers a full day of technical talks to reach developers and technical leaders in the EMEA region. Get best practices and insights for applications, from biopharma to medical imaging.

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Renee Yao <![CDATA[Insilico Medicine Identifies Therapeutic Targets for ALS With AI]]> http://www.open-lab.net/blog/?p=50556 2023-06-12T09:13:15Z 2022-07-14T16:00:00Z Drug discovery startup Insilico Medicine��alongside researchers from Harvard Medical School, Johns Hopkins School of Medicine, the Mayo Clinic, and...]]> Drug discovery startup Insilico Medicine��alongside researchers from Harvard Medical School, Johns Hopkins School of Medicine, the Mayo Clinic, and...Image Credit: Insilico Medicine

Drug discovery startup Insilico Medicine��alongside researchers from Harvard Medical School, Johns Hopkins School of Medicine, the Mayo Clinic, and others��used AI to identify more than two dozen gene targets related to amyotrophic lateral sclerosis (ALS). The research findings, which included 17 high-confidence and 11 novel therapeutic targets, were recently published in Frontiers in Aging��

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Abraham Stern <![CDATA[Accelerated Computing Holds the Key to Democratized Drug Discovery]]> http://www.open-lab.net/blog/?p=49410 2023-06-12T09:26:48Z 2022-06-24T17:44:16Z The field of drug discovery is at a fascinating inflection point. The physics of the problem are understood and calculable, yet quantum mechanical calculations...]]> The field of drug discovery is at a fascinating inflection point. The physics of the problem are understood and calculable, yet quantum mechanical calculations...

The field of drug discovery is at a fascinating inflection point. The physics of the problem are understood and calculable, yet quantum mechanical calculations are far too expensive and time consuming. Eroom��s Law observes that drug discovery is becoming slower and more expensive over time, despite improvements in technology. A recent article examining the transformational role of GPU��

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Vanessa Braunstein <![CDATA[OpenEye Scientific��s OMEGA Generates 3D Molecular Conformers for Drug Design 30X Faster with NVIDIA]]> http://www.open-lab.net/blog/?p=39581 2022-11-23T22:01:32Z 2021-11-03T13:00:00Z Computational molecular design involves compute-intense calculations that require exceptional processing power.  Whether working in pharmaceuticals,...]]> Computational molecular design involves compute-intense calculations that require exceptional processing power.  Whether working in pharmaceuticals,...Molecular structure graphic.

Computational molecular design involves compute-intense calculations that require exceptional processing power. Whether working in pharmaceuticals, biotechnology, agrochemicals, or the fragrance industry, researchers are oftentimes dealing with datasets that encompass millions to billions of compounds. Until recently, this required that companies invest in expensive��

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Michelle Horton <![CDATA[AI Model Predicts Drug Synergies for Fighting COVID-19]]> http://www.open-lab.net/blog/?p=38189 2024-08-12T17:56:28Z 2021-10-05T19:43:28Z A new study out of the Massachusetts Institute of Technology (MIT) could arm healthcare workers with the information needed to effectively treat COVID-19...]]> A new study out of the Massachusetts Institute of Technology (MIT) could arm healthcare workers with the information needed to effectively treat COVID-19...Graphic of COVID-19 virus.

A new study out of the Massachusetts Institute of Technology (MIT) could arm healthcare workers with the information needed to effectively treat COVID-19 patients. Recently published in the Proceedings of the National Academy of Sciences, the research develops a deep learning model that determines the best drug combinations for fighting the virus, despite having relatively limited data.

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Alexandre Milesi <![CDATA[Accelerating SE(3)-Transformers Training Using an NVIDIA Open-Source Model Implementation]]> http://www.open-lab.net/blog/?p=36411 2022-08-31T23:54:46Z 2021-08-24T17:50:03Z SE(3)-Transformers are versatile graph neural networks unveiled at NeurIPS 2020. NVIDIA just released an open-source optimized implementation that uses 43x less...]]> SE(3)-Transformers are versatile graph neural networks unveiled at NeurIPS 2020. NVIDIA just released an open-source optimized implementation that uses 43x less...

SE(3)-Transformers are versatile graph neural networks unveiled at NeurIPS 2020. NVIDIA just released an open-source optimized implementation that uses 43x less memory and is up to 21x faster than the baseline official implementation. SE(3)-Transformers are useful in dealing with problems with geometric symmetries, like small molecules processing, protein refinement��

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Michelle Horton <![CDATA[Predicting Protein Structures with Deep Learning]]> http://www.open-lab.net/blog/?p=35051 2024-08-12T17:57:49Z 2021-07-21T22:06:34Z Solving a mystery that stumped scientists for decades, last November a group of computational biologists from Alphabet��s DeepMind used AI to predict a...]]> Solving a mystery that stumped scientists for decades, last November a group of computational biologists from Alphabet��s DeepMind used AI to predict a...

Solving a mystery that stumped scientists for decades, last November a group of computational biologists from Alphabet��s DeepMind used AI to predict a protein��s structure from its amino acid sequence. Not even a year later, a new study offers a more powerful model, capable of computing protein structures in as little as 10 minutes, on one gaming computer. The research��

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Geetika Gupta <![CDATA[GPU-Accelerated Molecular Dynamics Applications Help Fight COVID-19]]> https://news.www.open-lab.net/?p=16729 2023-07-12T23:17:54Z 2020-04-20T23:31:00Z As the world battles to reach a scientific breakthrough in the fight against COVID-19, scientists are turning to computing resources to accelerate their...]]> As the world battles to reach a scientific breakthrough in the fight against COVID-19, scientists are turning to computing resources to accelerate their...

As the world battles to reach a scientific breakthrough in the fight against COVID-19, scientists are turning to computing resources to accelerate their research. To help make the process for scientists more accessible, we��re spotlighting a few of the GPU-accelerated applications that developers can use right now in the fight against this virus. Applications like AMBER, GROMACS, NAMD��

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