Vanessa Braunstein – NVIDIA Technical Blog News and tutorials for developers, data scientists, and IT admins 2023-11-29T23:13:01Z http://www.open-lab.net/blog/feed/ Vanessa Braunstein <![CDATA[Build Generative AI Pipelines for Drug Discovery with NVIDIA BioNeMo Service]]> http://www.open-lab.net/blog/?p=61944 2023-06-09T22:35:27Z 2023-03-21T15:50:00Z Creating new drug candidates is a heroic endeavor, often taking over 10 years to bring a drug to market. New supercomputing-scale large language models (LLMs)...]]>

Creating new drug candidates is a heroic endeavor, often taking over 10 years to bring a drug to market. New supercomputing-scale large language models (LLMs) that understand biology and chemistry text are helping scientists understand proteins, small molecules, DNA, and biomedical text. These state-of-the-art AI models help generate de novo proteins and molecules and predict the 3D…

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Vanessa Braunstein <![CDATA[Predict Protein Structures and Properties with Biomolecular Large Language Models]]> http://www.open-lab.net/blog/?p=58461 2023-06-12T08:22:17Z 2022-12-08T23:29:40Z The NVIDIA BioNeMo service is now available for early access. At GTC Fall 2022, NVIDIA unveiled BioNeMo, a domain-specific framework and service for training...]]>

The NVIDIA BioNeMo service is now available for early access. At GTC Fall 2022, NVIDIA unveiled BioNeMo, a domain-specific framework and service for training and serving biomolecular large language models (LLMs) for chemistry and biology at supercomputing scale across billions of parameters. The BioNeMo service is domain-optimized for chemical, proteomic, and genomic applications…

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Vanessa Braunstein <![CDATA[New Research Highlights Speed and Cost Savings of NVIDIA Clara Parabricks for Genomic Analyses]]> http://www.open-lab.net/blog/?p=56934 2023-06-12T08:35:42Z 2022-11-03T21:14:56Z Many organizations are using NVIDIA Clara Parabricks for fast human genome and exome analysis for large population projects, critically ill patients, clinical...]]>

Many organizations are using NVIDIA Clara Parabricks for fast human genome and exome analysis for large population projects, critically ill patients, clinical workflows, and cancer genomics projects. Their work aims to accurately and quickly identify disease-causing variants, keeping pace with accelerated next-generation sequencing as well as accelerated genomic analyses. Most recently…

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Vanessa Braunstein <![CDATA[Novel Transformer Model Achieves State-of-the-Art Benchmarks in 3D Medical Image Analysis]]> http://www.open-lab.net/blog/?p=49445 2023-07-05T19:27:30Z 2022-06-22T19:47:02Z At the Computer Vision and Pattern Recognition Conference (CVPR), NVIDIA researchers are presenting over 35 papers. This includes work on Shifted WINdows UNEt...]]>

At the Computer Vision and Pattern Recognition Conference (CVPR), NVIDIA researchers are presenting over 35 papers. This includes work on Shifted WINdows UNEt TRansformers (Swin UNETR)—the first transformer-based pretraining framework tailored for self-supervised tasks in 3D medical image analysis. The research is the first step in creating pretrained, large-scale, and self-supervised 3D models…

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Vanessa Braunstein <![CDATA[Boost AI Medical Device Streaming Workflows with the NVIDIA Clara Holoscan SDK]]> http://www.open-lab.net/blog/?p=49176 2022-11-04T17:56:12Z 2022-06-17T17:00:00Z Advances in edge computing, video cameras, real-time processing, and AI have helped transform medical devices over the years. NVIDIA developed the NVIDIA Clara...]]>

Advances in edge computing, video cameras, real-time processing, and AI have helped transform medical devices over the years. NVIDIA developed the NVIDIA Clara Holoscan platform to support the development of software-defined AI medical devices. The latest release of the NVIDIA Clara Holoscan SDK 0.2 offers real-time AI inference capabilities and fast I/O for high-performance streaming…

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Vanessa Braunstein <![CDATA[Scale Cancer Genome Sequencing Analysis and Variant Annotation Using NVIDIA Clara Parabricks 3.8]]> http://www.open-lab.net/blog/?p=48814 2023-06-12T09:30:12Z 2022-06-06T13:00:00Z Bioinformaticians are constantly looking for new tools that simplify and enhance genomic analysis pipelines. With over 60 tools, NVIDIA Clara Parabricks powers...]]>

Bioinformaticians are constantly looking for new tools that simplify and enhance genomic analysis pipelines. With over 60 tools, NVIDIA Clara Parabricks powers accurate and accelerated genomic analysis for germline and somatic workflows in research and clinical settings. Today, we announce the release of NVIDIA Clara Parabricks 3.8, featuring: The rapid increase in sequencing data…

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Vanessa Braunstein <![CDATA[Capture 6x Better Temporal Resolution Cardiac Imaging at any Heart Rate with Fujifilm Healthcare Cardio StillShot?]]> http://www.open-lab.net/blog/?p=46445 2022-04-21T18:17:09Z 2022-04-12T15:00:00Z Capturing clear diagnostic images of the heart and its vasculature is challenging in cardiac computed tomography (CT) imaging because the heart is always moving...]]>

Capturing clear diagnostic images of the heart and its vasculature is challenging in cardiac computed tomography (CT) imaging because the heart is always moving and the resulting images can be blurry. When a heart is beating quickly, at above 75 beats per minute or irregularly, good image resolution is almost impossible. Global diagnostic imaging leader Fujifilm Healthcare developed Cardio…

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Vanessa Braunstein <![CDATA[New Sensor Partners Expand Surgical, Ultrasound, and Data Acquisition Capabilities in the NVIDIA Clara Holoscan Platform]]> http://www.open-lab.net/blog/?p=45194 2023-03-22T01:19:13Z 2022-03-22T16:59:00Z New advances in computation make it possible for medical devices to automatically detect, measure, predict, simulate, map, and guide clinical care teams. NVIDIA...]]>

New advances in computation make it possible for medical devices to automatically detect, measure, predict, simulate, map, and guide clinical care teams. NVIDIA Clara Holoscan, the full-stack AI computing platform for medical devices, has added new sensor front-end partners for video capture, ultrasound research, data acquisition, and connection to legacy-medical devices.

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Vanessa Braunstein <![CDATA[Clara Parabricks 3.7 Brings Optimized and Accelerated Workflows for Gene Panels]]> http://www.open-lab.net/blog/?p=43070 2022-08-21T23:53:17Z 2022-01-18T18:00:00Z The newest release of GPU-powered NVIDIA Clara Parabricks v3.7 includes updates to germline variant callers, enhanced support for RNA-Seq pipelines, and...]]>

The newest release of GPU-powered NVIDIA Clara Parabricks v3.7 includes updates to germline variant callers, enhanced support for RNA-Seq pipelines, and optimized workflows for gene panels. With now over 50 tools, Clara Parabricks powers accurate and accelerated genomic analysis for gene panels, exomes, and genomes for clinical and research workflows. To date…

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Vanessa Braunstein <![CDATA[Removing Aliasing Artifacts in Ultrasound Color Doppler Imaging with NVIDIA Clara Holoscan and the NVIDIA Clara Developer Kit]]> http://www.open-lab.net/blog/?p=41711 2023-11-29T23:13:01Z 2021-11-29T18:53:40Z At RSNA 2021, there are dedicated tracks on ultrasound imaging, which is a cost-effective way to see what is going on inside a patient's body without exposure...]]>

At RSNA 2021, there are dedicated tracks on ultrasound imaging, which is a cost-effective way to see what is going on inside a patient’s body without exposure to radiation or the need for injections and surgeries. Ultrasound imaging is typically done by trained sonographers and needs special expertise to interpret. The probe is a small transducer to both transmit sound waves into the body…

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Vanessa Braunstein <![CDATA[OpenEye Scientific��s OMEGA Generates 3D Molecular Conformers for Drug Design 30X Faster with NVIDIA]]> http://www.open-lab.net/blog/?p=39581 2022-11-23T22:01:32Z 2021-11-03T13:00:00Z Computational molecular design involves compute-intense calculations that require exceptional processing power.  Whether working in pharmaceuticals,...]]>

Computational molecular design involves compute-intense calculations that require exceptional processing power. Whether working in pharmaceuticals, biotechnology, agrochemicals, or the fragrance industry, researchers are oftentimes dealing with datasets that encompass millions to billions of compounds. Until recently, this required that companies invest in expensive…

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Vanessa Braunstein <![CDATA[How Edge Computing is Transforming Healthcare]]> http://www.open-lab.net/blog/?p=38747 2023-02-10T22:10:56Z 2021-10-26T16:30:00Z When analyzing healthcare and life science data from a distance, bandwidth congestion, network reliability, and latency issues can negatively affect outcomes....]]>

When analyzing healthcare and life science data from a distance, bandwidth congestion, network reliability, and latency issues can negatively affect outcomes. This is critical when timing is so important. To address these concerns, forward-thinking healthcare organizations are adopting edge computing, in which data is analyzed and acted upon at the point of collection. AI-powered instruments…

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Vanessa Braunstein <![CDATA[NVIDIA Data Scientists Take Top Spots in MICCAI 2021 Brain Tumor Segmentation Challenge]]> http://www.open-lab.net/blog/?p=38028 2022-08-21T23:52:44Z 2021-09-30T18:56:33Z NVIDIA data scientists this week took three of the top 10 spots in a brain tumor segmentation challenge validation phase at the prestigious MICCAI 2021 medical...]]>

NVIDIA data scientists this week took three of the top 10 spots in a brain tumor segmentation challenge validation phase at the prestigious MICCAI 2021 medical imaging conference. Now in its tenth year, the BraTS challenge tasked applicants with submitting state-of-the-art AI models for segmenting heterogeneous brain glioblastomas sub-regions in multi-parametric magnetic resonance imaging…

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Vanessa Braunstein <![CDATA[GPU-Accelerated Tools Added to NVIDIA Clara Parabricks v3.6 for Cancer and Germline Analyses]]> http://www.open-lab.net/blog/?p=36621 2022-08-21T23:52:34Z 2021-08-24T17:09:17Z The release of NVIDIA Clara Parabricks v3.6 brings new applications for variant calling, annotation, filtering, and quality control to its suite of powerful...]]>

The release of NVIDIA Clara Parabricks v3.6 brings new applications for variant calling, annotation, filtering, and quality control to its suite of powerful genomic analysis tools. Now featuring over 33 accelerated tools for every stage of genomic analysis, NVIDIA Clara Parabricks provides GPU-accelerated bioinformatic pipelines that can scale for any workload. As genomes and exomes are…

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Vanessa Braunstein <![CDATA[King��s College London Accelerates Synthetic Brain 3D Image Creation Using AI Models Powered by Cambridge-1 Supercomputer]]> http://www.open-lab.net/blog/?p=35108 2023-01-04T21:49:58Z 2021-07-26T08:00:00Z King��s College London, along with partner hospitals and university collaborators, unveiled new details today about one of the first projects on Cambridge-1,...]]>

King’s College London, along with partner hospitals and university collaborators, unveiled new details today about one of the first projects on Cambridge-1, the United Kingdom’s most powerful supercomputer. The Synthetic Brain Project is focused on building deep learning models that can synthesize artificial 3D MRI images of human brains. These models can help scientists understand what a human…

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Vanessa Braunstein <![CDATA[The Human Genome Center at University of Tokyo Adopts NVIDIA Clara Parabricks for Rapid Genomic Analysis]]> https://news.www.open-lab.net/?p=19440 2022-08-21T23:40:27Z 2021-03-03T17:19:55Z The Human Genome Center (HGC) at University of Tokyo announced a new genomics platform to accelerate genomic analysis by 40X compared to a CPU-based...]]>

The Human Genome Center (HGC) at University of Tokyo announced a new genomics platform to accelerate genomic analysis by 40X compared to a CPU-based environment, utilizing NVIDIA Clara Parabricks Pipelines genomics software. The genomic analysis will run on SHIROKANE, HGC’s fastest supercomputer for life sciences in Japan, and powered by NVIDIA DGX A100. The platform will be available to users on…

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Vanessa Braunstein <![CDATA[Building State-of-the-Art Biomedical and Clinical NLP Models with BioMegatron]]> http://www.open-lab.net/blog/?p=21390 2023-03-22T01:09:06Z 2020-10-05T13:00:00Z With the advent of new deep learning approaches based on transformer architecture, natural language processing (NLP) techniques have undergone a revolution in...]]>

With the advent of new deep learning approaches based on transformer architecture, natural language processing (NLP) techniques have undergone a revolution in performance and capabilities. Cutting-edge NLP models are becoming the core of modern search engines, voice assistants, chatbots, and more. Modern NLP models can synthesize human-like text and answer questions posed in natural language.

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